PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g081240.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 931aa    MW: 103037 Da    PI: 5.3529
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g081240.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.5e-24147248199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   
  Sopim04g081240.0.1 147 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFI-- 234
                         99*********************999*****9555554.49************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++ +l+++v+r+
  Sopim04g081240.0.1 235 RDEKSQLLLGVRRA 248
                         45677789999997 PP

2Auxin_resp118.17.4e-39273356183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+++YnPra++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt++g+sdldp+rWp SkWr+L+
  Sopim04g081240.0.1 273 AAHAAANRSTFTIFYNPRACPSEFVIPLAKYRKSIYnTQLSVGMRFGMMFETEESGKRRYMGTISGISDLDPLRWPSSKWRCLQ 356
                         79********************************99799********************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-47134276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-42140261IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-22146247No hitNo description
PfamPF023625.4E-22147248IPR003340B3 DNA binding domain
SMARTSM010192.7E-24147249IPR003340B3 DNA binding domain
PROSITE profilePS5086313.211147249IPR003340B3 DNA binding domain
PfamPF065074.7E-34273356IPR010525Auxin response factor
PfamPF023093.9E-9810903IPR033389AUX/IAA domain
PROSITE profilePS5174525.992817901IPR000270PB1 domain
SuperFamilySSF542779.81E-9836896No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 931 aa     Download sequence    Send to blast
MGSVEEKNKP GSLVSGAHTL LEEMKLLKEM QDHTGGGRKL ISSELWHACA GPLVTLPQVG  60
SLVYYFPQGH SEQVAVSTNR TATSQIPNYP NLASQLLCQV HNVTLHADKE TDEIYAQMSL  120
QPVNSEKDVF PIPDFGLKPN KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYSM  180
QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSMFV GAKRLRAGDS VLFIRDEKSQ  240
LLLGVRRANR QQTSLPSSVL SADSMHIGVL AAAAHAAANR STFTIFYNPR ACPSEFVIPL  300
AKYRKSIYNT QLSVGMRFGM MFETEESGKR RYMGTISGIS DLDPLRWPSS KWRCLQVEWD  360
EPGCGDKQNR VSPWEVETPE SLFIFPSLTA GLKRPYQSTF LGAQTEWDSL MQHRPFMRVP  420
ENVYGDLQSS SISNLWSEQL MKMLIRPPPG LTGLQCGVPT VQDIKVALPQ EARNVVQPAG  480
NQKPELITVE ATPAQSETNS EVVLNQPVGV VNSISSQQAT LQAKSKPPEK VETDIIGKNS  540
EPRKETSNSS VKLDQFQCNE DKVAIKPASP HDLPTDASVT ASHHNSFSQL QASPWLIPHN  600
PQIDSAASNN ILQCPTNNEW NMSSLQSAAG LLKYPVSTST LTKHDNSFML PDTIGHGLAP  660
IGQDLWDHQL NDVKCFSQTN LQVPLDITNM QFLPDSYGFK DLSEESHNQS DIYSCLNFDS  720
NSGSTVIDNS VSSTVLDEFC NLKHTDFQNP SDFLLGNISS SQDVQSQITS ASLADSQNFS  780
VQEFADNSGG ASSSNVNFDE CNLLQNSSWQ QVAPRVRTYT KIQKTGSVGR SIDVSGFKNY  840
EELRSEIERM FGLEGLLNDT RGSSWKLVYV DFENDVLLVG DDPWEEFVGC VRCIRILSPT  900
EVQQMGEEGM QLLNSAGLQS INGSTSEFPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013815392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1952480.0HM195248.1 Solanum lycopersicum auxin response factor 5 (ARF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234545.10.0auxin response factor 5
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLK4BVK30.0K4BVK3_SOLLC; Auxin response factor
STRINGSolyc04g081240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58592334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein